Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs16838953 | chr3:127635204 | T/G | 0 | 490 | 16.27 | 15 | 6.03 | KM Plot |
| THCA | rs16838954 | chr3:127635801 | C/T | 0 | 490 | 16.3 | 14.97 | 6.03 | KM Plot |
| THCA | rs16839044 | chr3:127641368 | A/C | 0 | 490 | 6.03 | 14.93 | 16.33 | KM Plot |
| THCA | rs16839675 | chr3:127694583 | C/T | 0 | 490 | 16.23 | 15.33 | 6.03 | KM Plot |
| THCA | rs16852063 | chr1:16207862 | T/G | 0.00018 | 488 | 15.3 | 17.33 | 17.77 | KM Plot |
| THCA | rs1685752 | chr3:155700559 | C/T | 8.14E-5 | 481 | 11.98 | 14.97 | 16.67 | KM Plot |
| THCA | rs16860621 | chr1:22379360 | G/A | 4.11E-8 | 488 | 15.32 | 17.68 | 9.47 | KM Plot |
| THCA | rs16889092 | chr6:24334379 | C/G | 4.19E-6 | 486 | 16.27 | 14.8 | 18.23 | KM Plot |
| THCA | rs16889240 | chr6:24430642 | C/T | 5.46E-7 | 482 | 16.37 | 14.9 | 9.25 | KM Plot |
| THCA | rs16889242 | chr6:24430746 | A/C | 5.79E-7 | 481 | 16.33 | 14.9 | 9.25 | KM Plot |
| THCA | rs16889253 | chr6:24431489 | G/A | 6.03E-7 | 480 | 16.3 | 14.9 | 9.25 | KM Plot |
| THCA | rs16889391 | chr6:24489157 | C/T | 2.89E-9 | 485 | 16.37 | 15.73 | 12.67 | KM Plot |
| THCA | rs16891397 | chr6:26200256 | C/T | 2.3E-8 | 488 | 15.63 | 16.8 | 4.75 | KM Plot |
| THCA | rs16891401 | chr6:26202337 | G/A | 2.71E-8 | 487 | 15.33 | 16.72 | 4.75 | KM Plot |
| THCA | rs16891405 | chr6:26204506 | A/G | 2.68E-8 | 486 | 15.33 | 16.8 | 4.75 | KM Plot |